main script implemented

config/config.py

@@ -37,27 +37,40 @@ class Config(BaseModel):
     optimizer: Optional[ComponentConfig] = None
     scheduler: Optional[ComponentConfig] = None
 
-    def save_json(self, file_path: str, indent: int = 4) -> None:
+    def asdict(self) -> Dict[str, Any]:
         """
-        Saves the configuration to a JSON file using dumps of each individual field.
+        Produce a JSON‐serializable dict of this config, including nested
+        ComponentConfig and DatasetConfig entries. Useful for saving to file
+        or passing to experiment loggers (e.g. wandb.init(config=...)).
 
-        Args:
-            file_path (str): Destination path for the JSON file.
-            indent (int): Indentation level for the JSON file.
+        Returns:
+            A dict with keys 'model', 'dataset_config', and (if set)
+            'criterion', 'optimizer', 'scheduler'.
         """
-        config_dump = {
+        data: Dict[str, Any] = {
             "model": self.model.dump(),
-            "dataset_config": self.dataset_config.model_dump()
+            "dataset_config": self.dataset_config.model_dump(),
         }
         if self.criterion is not None:
-            config_dump["criterion"] = self.criterion.dump()
+            data["criterion"] = self.criterion.dump()
         if self.optimizer is not None:
-            config_dump["optimizer"] = self.optimizer.dump()
+            data["optimizer"] = self.optimizer.dump()
         if self.scheduler is not None:
-            config_dump["scheduler"] = self.scheduler.dump()
+            data["scheduler"] = self.scheduler.dump()
+        return data
 
+
+    def save_json(self, file_path: str, indent: int = 4) -> None:
+        """
+        Save this config to a JSON file.
+
+        Args:
+            file_path: Path to write the JSON file.
+            indent: JSON indent level.
+        """
+        config_dict = self.asdict()
         with open(file_path, "w", encoding="utf-8") as f:
-            f.write(json.dumps(config_dump, indent=indent))
+            f.write(json.dumps(config_dict, indent=indent))
 
 
     @classmethod

config/dataset_config.py

@@ -214,6 +214,34 @@ class DatasetTestingConfig(BaseModel):
         return self
 
 
+class WandbConfig(BaseModel):
+    """
+    Configuration for Weights & Biases logging.
+    """
+    use_wandb: bool = False            # Whether to enable WandB logging
+    project: Optional[str] = None      # WandB project name
+    entity: Optional[str] = None       # WandB entity (user or team)
+    name: Optional[str] = None         # Name of the run
+    tags: Optional[list[str]] = None   # List of tags for the run
+    notes: Optional[str] = None        # Notes or description for the run
+    save_code: bool = True             # Whether to save the code to WandB
+
+    @model_validator(mode="after")
+    def validate_wandb(cls) -> "WandbConfig":
+        if cls.use_wandb:
+            if not cls.project:
+                raise ValueError("When use_wandb=True, 'project' must be provided")
+            if not cls.entity:
+                raise ValueError("When use_wandb=True, 'entity' must be provided")
+        return cls
+    
+    def asdict(self) -> Dict[str, Any]:
+        """
+        Return a dict of all W&B parameters, excluding 'use_wandb' and any None values.
+        """
+        return self.model_dump(exclude_none=True, exclude={"use_wandb"})
+
+
 class DatasetConfig(BaseModel):
     """
     Main dataset configuration that groups fields into nested models for a structured and readable JSON.
@@ -222,6 +250,7 @@ class DatasetConfig(BaseModel):
     common: DatasetCommonConfig = DatasetCommonConfig()
     training: DatasetTrainingConfig = DatasetTrainingConfig()
     testing: DatasetTestingConfig = DatasetTestingConfig()
+    wandb: WandbConfig = WandbConfig()
 
     @model_validator(mode="after")
     def validate_config(self) -> "DatasetConfig":
@@ -256,11 +285,13 @@ class DatasetConfig(BaseModel):
             return {
                 "is_training": self.is_training,
                 "common": self.common.model_dump(),
-                "training": self.training.model_dump() if self.training else {}
+                "training": self.training.model_dump() if self.training else {},
+                "wandb": self.wandb.model_dump()
             }
         else:
             return {
                 "is_training": self.is_training,
                 "common": self.common.model_dump(),
-                "testing": self.testing.model_dump() if self.testing else {}
+                "testing": self.testing.model_dump() if self.testing else {},
+                "wandb": self.wandb.model_dump()
             }

core/segmentator.py

@@ -592,6 +592,21 @@ class CellSegmentator:
             logger.info(f"   ├─ Ensemble model 1: {testing.ensemble_pretrained_weights1}")
             logger.info(f"   └─ Ensemble model 2: {testing.ensemble_pretrained_weights2}")
 
+        wandb_cfg = config.dataset_config.wandb
+        if wandb_cfg.use_wandb:
+            logger.info("[W&B]")
+            logger.info(f"├─ Project: {wandb_cfg.project}")
+            logger.info(f"├─ Entity:  {wandb_cfg.entity}")
+            if wandb_cfg.name:
+                logger.info(f"├─ Run name: {wandb_cfg.name}")
+            if wandb_cfg.tags:
+                logger.info(f"├─ Tags:     {', '.join(wandb_cfg.tags)}")
+            if wandb_cfg.notes:
+                logger.info(f"├─ Notes:    {wandb_cfg.notes}")
+            logger.info(f"└─ Save code: {'yes' if wandb_cfg.save_code else 'no'}")
+        else:
+            logger.info("[W&B] Logging disabled")
+
         logger.info("===================================")
 
 
@@ -705,6 +720,7 @@ class CellSegmentator:
             tablefmt="fancy_grid"
         )
         print(table, "\n")
+        if self._dataset_setup.wandb.use_wandb:
             wandb.log(results, step=step)
     
     

main.py

@@ -0,0 +1,41 @@
+import os
+import wandb
+
+from config.config import Config
+from core.data import *
+from core.segmentator import CellSegmentator
+
+
+if __name__ == "__main__":
+    config_path = 'config/templates/train/ModelV_BCE_MSE_Loss_AdamW_CosineAnnealing.json'
+    # config_path = 'config/templates/predict/ModelV.json'
+    
+    config = Config.load_json(config_path)
+    # config = Config.load_json(config_path)
+    
+    if config.dataset_config.wandb.use_wandb:
+        # Initialize W&B
+        wandb.init(config=config.asdict(), **config.dataset_config.wandb.asdict())
+
+        # How many batches to wait before logging training status
+        wandb.config.log_interval = 10
+    
+    segmentator = CellSegmentator(config)
+    segmentator.create_dataloaders()
+    
+    # Watch parameters & gradients of model
+    if config.dataset_config.wandb.use_wandb:
+        wandb.watch(segmentator._model, log="all", log_graph=True)
+    
+    segmentator.run()
+    
+    weights_dir = "weights" if not config.dataset_config.wandb.use_wandb else wandb.run.dir # type: ignore
+    saving_path = os.path.join(
+        weights_dir, os.path.basename(config.dataset_config.common.predictions_dir) + '.pth'
+    )
+    segmentator.save_checkpoint(saving_path)
+    
+    if config.dataset_config.wandb.use_wandb:
+        wandb.save(saving_path)
+    
+    

train.py

@@ -1,10 +0,0 @@
-from config.config import Config
-from pprint import pprint
-
-
-config = Config.load_json('/workspace/ext_data/projects/model-v/config/templates/train/ModelV_BCE_MSE_Loss_AdamW_CosineAnnealing.json')
-pprint(config, indent=4)
-
-print('\n\n')
-config = Config.load_json('/workspace/ext_data/projects/model-v/config/templates/predict/ModelV.json')
-pprint(config, indent=4)